How about Def Jam Fight for New York The Takeover?

good one, that title made me angry to read just now

What about Shin Megami Tensei: Devil Summoner: Raidou Kuzunoha vs the Soulless Army and its sequel Shin Megami Tensei: Devil Summoner: Raidou Kuzunoha vs King Abbadon?

say no more

Does Battle for Bikini Bottom Rehydrated count?

i think i'd like to exclude remasters because that would allow for "hd edition" "definitive edition" etc titles and then this would never end

the whole ace attorney series probably works for this

truth

megaman battle network 4 red sun/blue moon both fit for this

as do all of the pokemon mystery dungeon games sans super mystery dungeon

basically every touhou game