shout out to kitty horrorshow's The Cradle of Eve (which is set on a derelict spaceship, dunno if those count or no)

Added!

Prey (2006)

Tacoma? It's a little spooky.

Perhaps The Swapper?

Metroid Fusion! There are also single levels on space stations in other Metroid games, like the Vesper Defense Outpost in Prime: Hunters, if that counts.